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A fast, open-source WDL runner and toolkit from St. Jude's research engineers
Genomics teams get one open-source engine that lints, checks and runs WDL pipelines the same way on a laptop or a cluster, from a lab with real production workloads.
Sprocket is an engine for the Workflow Description Language (WDL 1.3 and later) built by St. Jude Rust Labs at St. Jude Children's Research Hospital. It validates, lints and runs WDL workflows, with editor support through a language server, and scales the same pipeline from a single machine to HPC schedulers. It installs with brew install sprocket, is Apache-2.0 licensed, and has been developed in the open since 2023, now at v0.31.0 with about 215 GitHub stars.
Author CI workflows in TypeScript, Python, Go or Rust and compile them to YAML
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